R

ArrayVar BooleanVar ConcentrationBasedSpecies DoubleVar FloatVar IntVar LongVar PopulationBasedSpecies BaseSpecies Var

RateLawReaction

KineticReactionNetwork

Reaction

CatalyticReactionNetwork DeterministicReactionNetwork KineticCatalyticReactionNetwork KineticReactionNetwork ReactionNetwork StochasticReactionNetwork

ReactionFactory

ReactionNetwork

ReactionMaker

ReactionNetwork

ReactionNetwork

mois

ReactionWithCatalyser

CatalyticReactionNetwork

r

KarrScheduler MapReduceScheduler

radians

Math

rate

KineticReaction MassActionReaction RateLawReaction

reactions

DeterministicReactionNetwork StochasticReactionNetwork

reset

BaseProcess Model NetCDFWriter PlotFileWriter PlotGUIWriter ProcessGroup StepHandler TsvWriter

rho

WeisseScheduler

rhs

CatalysedReaction Reaction MassActionReaction RateLawReaction SimpleReaction Reaction

rng

StochasticReactionNetwork

run

Model MoisMain Gui GuiFinish GuiHandle GuiReset

running

Gui

rxnToSeq

DeterministicReactionNetwork StochasticReactionNetwork

rxns

DeterministicReactionNetwork StochasticReactionNetwork